PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G176500.1
Common NameB456_001G176500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 238aa    MW: 26082.8 Da    PI: 7.6186
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G176500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1866116256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Gorai.001G176500.1  66 TYRGVRIRS-WGKWVSEIREPRK---KSRIWLGTYSTAEMAARAHDVAALAIKGH 116
                         69****888.**********843...6***********************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381238.3E-222219IPR017392AP2/ERF transcription factor ERF/PTI6
SMARTSM003806.8E-3666129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3166124IPR001471AP2/ERF domain
PROSITE profilePS5103222.73466123IPR001471AP2/ERF domain
PfamPF008471.1E-1266116IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2166124IPR016177DNA-binding domain
PRINTSPR003674.0E-106778IPR001471AP2/ERF domain
CDDcd000184.40E-3067123No hitNo description
PRINTSPR003674.0E-1089105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSTTASTSTS SSTGFSFPGF RKNKKTSKNS VAPQESKKAG DYSEENGNGK KKRGMISEDG  60
GSKHPTYRGV RIRSWGKWVS EIREPRKKSR IWLGTYSTAE MAARAHDVAA LAIKGHKAYL  120
NFPQLAKELP RPASTSPKDI QAAASQAASS TFLETRRSTI EDEAGPNQEE IPVSHSSFTS  180
AASDNLQESS TSLFTHDDDT LFDLPDLMID CSYSSAWQIC AVDAGFRTEE PFVWDYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1567123360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052232.11e-100Integrase-type DNA-binding superfamily protein, putative
SwissprotQ8LBQ75e-64ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0D2Q0981e-177A0A0D2Q098_G
STRINGPOPTR_0014s05500.13e-75(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-53ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]